Exams
The exams (i.e., analyses) and tools (i.e., methods) available in the CIS are presented in this section.
The page "Results" provides information about the outcomes of analyses launched with samples and related output paths.
Exams Results
The Exams Results page lists all results from bioinformatic analyses executed in the system, information on the run and location of results.
Note 1. "Exam" tables are the only ones on which the filter action from activation of the cart has no effect.
Nota 2. In order to run analyses, it is necessary to have all input files from analyses upstream, which can be checked in the "Exam" tables. For more information on how run analyses, check the links to the wiki pages below.
Available actions are the same as for table of samples.
Report errors
If the same analysis has been run multiple times on the same sample, the system will automatically use the most recent imported results as input for downstream analyses, whenever required.
If an analysis results are not good for usage, to prevent the system to use a specific run as input for other analyses it's possible to mark that analysis as an error-carrying run. To do that, select entries from the table and select from the context menu "Report error".
Note: when marking an analysis as an error, the system will automatically mark as errors all other analyses that used as input the results of the marked one. Example: marking a de novo assembly with shovill as an error will result in automatic invalidation of all typing analyses that used that specific assemly as input.
The following video shows how to report an error:
